Matches in Nanopublications for { ?s ?p ?o <http://purl.org/np/RAYiQ_XN8D2NiEG_nswWXZA-eXYSsgC14480c-Gvr_FVI#assertion>. }
- is_nonsense_variant_of label "is nonsense variant of - holds between a sequence variant and a gene, such the sequence variant results in a premature stop codon" assertion.
- is_sequence_variant_of label "is sequence variant of - holds between a sequence variant and a nucleic acid entity" assertion.
- is_splice_site_variant_of label "is splice site variant of - holds between a sequence variant and a gene, such the sequence variant is in the canonical splice site of one of the gene's exons." assertion.
- is_synonymous_variant_of label "is synonymous variant of - holds between a sequence variant and a gene, such the sequence variant is in the coding sequence of the gene, but results in the same amino acid sequence" assertion.
- likelihood_associated_with label "likelihood associated with - " assertion.
- located_in label "located in - holds between a material entity and a material entity or site within which it is located (but of which it is not considered a part)" assertion.
- location_of label "location of - holds between material entity or site and a material entity that is located within it (but not considered a part of it)" assertion.
- manifestation_of label "manifestation of - that part of a phenomenon which is directly observable or visibly expressed, or which gives evidence to the underlying process; used in SemMedDB for linking things like dysfunctions and processes to some disease or syndrome" assertion.
- member_of label "member of - Defines a mereological relation between a item and a collection." assertion.
- mentioned_by label "mentioned by - refers to is a relation between one named thing and the information content entity that it makes reference to." assertion.
- mentions label "mentions - refers to is a relation between one information content entity and the named thing that it makes reference to." assertion.
- model_of label "model of - holds between a thing and some other thing it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity." assertion.
- molecular_activity_enabled_by label "molecular activity enabled by - The gene product, gene, or complex that catalyzes the reaction" assertion.
- molecular_activity_has_input label "molecular activity has input - A chemical entity that is the input for the reaction" assertion.
- molecular_activity_has_output label "molecular activity has output - A chemical entity that is the output for the reaction" assertion.
- negatively_correlated_with label "negatively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move in opposite directions (i.e. increased in one or presence of one correlates with a decrease or absence of the other)." assertion.
- nutrient_of label "nutrient of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive)" assertion.
- occurs_in label "occurs in - holds between a process and a material entity or site within which the process occurs" assertion.
- occurs_together_in_literature_with label "occurs together in literature with - holds between two entities where their co-occurrence is correlated by counts of publications in which both occur, using some threshold of occurrence as defined by the edge provider." assertion.
- opposite_of label "opposite of - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). (This description is from RO. Needs to be rephrased)." assertion.
- orthologous_to label "orthologous to - a homology relationship between entities (typically genes) that diverged after a speciation event." assertion.
- overlaps label "overlaps - holds between entities that overlap in their extents (materials or processes)" assertion.
- paralogous_to label "paralogous to - a homology relationship that holds between entities (typically genes) that diverged after a duplication event." assertion.
- part_of label "part of - holds between parts and wholes (material entities or processes)" assertion.
- participates_in label "participates in - holds between a continuant and a process, where the continuant is somehow involved in the process" assertion.
- physically_interacts_with label "physically interacts with - holds between two entities that make physical contact as part of some interaction. does not imply a causal relationship." assertion.
- preceded_by label "preceded by - holds between two processes, where the other is completed before the one begins" assertion.
- precedes label "precedes - holds between two processes, where one completes before the other begins" assertion.
- prevented_by label "prevented by - holds between a potential outcome of which the likelihood was reduced by the application or use of an entity." assertion.
- produces label "produces - holds between a material entity and a product that is generated through the intentional actions or functioning of the material entity" assertion.
- provider label "provider - person, group, organization or project that provides a piece of information (e.g. a knowledge association)." assertion.
- publisher label "publisher - organization or person responsible for publishing books, periodicals, podcasts, games or software. Note that in the case of publications which have a containing "published in" node property, the publisher association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the publisher agent of the encompassing publication (e.g. only from the Journal referenced by the 'published_in' property of an journal article Publication node)." assertion.
- regulates label "regulates - A more specific form of affects, that implies the effect results from a biologically evolved control mechanism. Gene-affects-gene relationships will (almost) always involve regulation. Exogenous/environmental chemical-affects-gene relationships are not cases of regulation in this definition. Instead these would be captured using the 'affects' predicate, or possibly one of the 'interacts with' predicates depending on the nature of the interaction." assertion.
- related_to label "related to - A relationship that is asserted between two named things" assertion.
- related_to_at_concept_level label "related to at concept level - Represents a relationship held between terminology components that describe the conceptual model of a domain." assertion.
- related_to_at_instance_level label "related to at instance level - Represents a relationship held between two instances of a data classes. Much like an assertion component, in an ABox, these represent facts associated with the conceptual model." assertion.
- response_affected_by label "response affected by - holds between two chemical entities where the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) of one is affected by the action of the other." assertion.
- same_as label "same as - holds between two entities that are considered equivalent to each other" assertion.
- similar_to label "similar to - holds between an entity and some other entity with similar features." assertion.
- subclass_of label "subclass of - holds between two classes where the domain class is a specialization of the range class" assertion.
- superclass_of label "superclass of - holds between two classes where the domain class is a super class of the range class" assertion.
- target_for label "target for - A gene is a target of a disease when its products are druggable and when a drug interaction with the gene product could have a therapeutic effect" assertion.
- temporally_related_to label "temporally related to - holds between two entities with a temporal relationship" assertion.
- transcribed_from label "transcribed from - x is transcribed from y if and only if x is synthesized from template y" assertion.
- transcribed_to label "transcribed to - inverse of transcribed from" assertion.
- translates_to label "translates to - x (amino acid chain/polypeptide) is the ribosomal translation of y (transcript) if and only if a ribosome reads y (transcript) through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces x (amino acid chain/polypeptide)" assertion.
- translation_of label "translation of - inverse of translates to" assertion.
- xenologous_to label "xenologous to - a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor." assertion.