Nanopublications

Matches in Nanopublications for { ?s ?p ?o <http://purl.org/np/RArAFrdM4rux7Cwl-lT_a4JzGk9tcGItbpd7ykkbD3S2M#assertion>. }

Showing items 1 to 100 of ±528 with 100 items per page.

subject label "subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
object label "object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
id label "id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" assertion.
has_evidence label "has evidence - connects an association to an instance of supporting evidence" assertion.
description label "description - a human-readable description of an entity" assertion.
category label "category - Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. * In a neo4j database this MAY correspond to the neo4j label tag. * In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, ... In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}" assertion.
negated label "negated - if set to true, then the association is negated i.e. is not true" assertion.
interacts_with label "interacts with - holds between any two entities that directly or indirectly interact with each other" assertion.
correlated_with label "correlated with - A relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated using a correlation analysis method." assertion.
affects label "affects - describes an entity that has a direct affect on the state or quality of another existing entity. Use of the 'affects' predicate implies that the affected entity already exists, unlike predicates such as 'affects risk for' and 'prevents, where the outcome is something that may or may not come to be." assertion.
association_type label "association type - rdf:type of biolink:Association should be fixed at rdf:Statement" assertion.
has_confidence_level label "has confidence level - connects an association to a qualitative term denoting the level of confidence" assertion.
treats label "treats - holds between a therapeutic procedure or chemical entity and a disease or phenotypic feature that it is used to treat" assertion.
treated_by label "treated by - holds between a disease or phenotypic feature and a therapeutic process or chemical entity that is used to treat the condition" assertion.
stage_qualifier label "stage qualifier - stage during which gene or protein expression of takes place." assertion.
qualifiers label "qualifiers - connects an association to qualifiers that modify or qualify the meaning of that association" assertion.
publications label "publications - One or more publications that report the statement expressed in an Association, or provide information used as evidence supporting this statement." assertion.
provided_by label "provided by - The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph." assertion.
name label "name - A human-readable name for an attribute or entity." assertion.
has_phenotype label "has phenotype - holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). In SNOMEDCT, disorders with keyword 'characterized by' should translate into this predicate." assertion.
has_drug label "has drug - connects an entity to one or more drugs" assertion.
prevents label "prevents - holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical entity, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature." assertion.
predisposes label "predisposes - holds between two entities where exposure to one entity increases the chance of developing the other" assertion.
narrow_match label "narrow match - a list of terms from different schemas or terminology systems that have a narrower, more specific meaning. Narrower terms are typically shown as children in a hierarchy or tree." assertion.
aggregator_knowledge_source label "aggregator knowledge source - An intermediate aggregator resource from which knowledge expressed in an Association was retrieved downstream of the original source, on its path to its current serialized form." assertion.
associated_with label "associated with - Expresses a relationship between two named things where the relationship is typically generated statistically (though not in all cases), and is weaker than its child, 'correlated with', but stronger than its parent, 'related to'. This relationship holds between two concepts represented by variables for which a statistical dependence is demonstrated. E.g. the statement “Atrial Fibrillation (Afib) is associated with Myocardial Infarction (MI)” asserts that having Afib is not statistically independent from whether a patient will also have MI. Note that in Translator associations, the subject and object concepts may map exactly to the statistical variables, or represent related entities for which the variables serve as proxies in an Association (e.g. diseases, chemical entities or processes)." assertion.
positively_correlated_with label "positively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move together in the same direction (i.e. increased in one or presence of one correlates with an increase or presence of the other)." assertion.
ameliorates label "ameliorates - A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure, clinical intervention) and a condition (a phenotype or disease), where the presence of the entity reduces or eliminates some or all aspects of the condition." assertion.
FDA_adverse_event_level label "FDA adverse event level - " assertion.
FDA_approval_status label "FDA approval status - " assertion.
actively_involved_in label "actively involved in - holds between a continuant and a process or function, where the continuant actively contributes to part or all of the process or function it realizes" assertion.
address label "address - the particulars of the place where someone or an organization is situated. For now, this slot is a simple text "blob" containing all relevant details of the given location for fitness of purpose. For the moment, this "address" can include other contact details such as email and phone number(?)." assertion.
adjusted_p_value label "adjusted p value - The adjusted p-value is the probability of obtaining test results at least as extreme as the results actually observed, under the assumption that the null hypothesis is correct, adjusted for multiple comparisons. P is always italicized and capitalized. The actual P value* should be expressed (P=. 04) rather than expressing a statement of inequality (P<. 05), unless P<." assertion.
affected_by label "affected by - describes an entity of which the state or quality is affected by another existing entity." assertion.
affects_risk_for label "affects risk for - holds between two entities where exposure to one entity alters the chance of developing the other" assertion.
affiliation label "affiliation - a professional relationship between one provider (often a person) within another provider (often an organization). Target provider identity should be specified by a CURIE. Providers may have multiple affiliations." assertion.
agent_id label "agent id - Different classes of agents have distinct preferred identifiers. For publishers, use the ISBN publisher code. See https://grp.isbn-international.org/ for publisher code lookups. For editors, authors and individual providers, use the individual's ORCID if available; Otherwise, a ScopusID, ResearchID or Google Scholar ID ('GSID') may be used if the author ORCID is unknown. Institutional agents could be identified by an International Standard Name Identifier ('ISNI') code." assertion.
agent_name label "agent name - it is recommended that an author's 'name' property be formatted as "surname, firstname initial."" assertion.
anatomical_context_qualifier label "anatomical context qualifier - A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location)." assertion.
anatomical_entity_to_anatomical_entity_association_object label "anatomical entity to anatomical entity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
anatomical_entity_to_anatomical_entity_association_subject label "anatomical entity to anatomical entity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
anatomical_entity_to_anatomical_entity_ontogenic_association_object label "anatomical entity to anatomical entity ontogenic association object - the structure at an earlier time" assertion.
anatomical_entity_to_anatomical_entity_ontogenic_association_predicate label "anatomical entity to anatomical entity ontogenic association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
anatomical_entity_to_anatomical_entity_ontogenic_association_subject label "anatomical entity to anatomical entity ontogenic association subject - the structure at a later time" assertion.
anatomical_entity_to_anatomical_entity_part_of_association_object label "anatomical entity to anatomical entity part of association object - the whole" assertion.
anatomical_entity_to_anatomical_entity_part_of_association_predicate label "anatomical entity to anatomical entity part of association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
anatomical_entity_to_anatomical_entity_part_of_association_subject label "anatomical entity to anatomical entity part of association subject - the part" assertion.
animal_model_available_from label "animal model available from - " assertion.
article_iso_abbreviation label "article iso abbreviation - Optional value, if used locally as a convenience, is set to the iso abbreviation of the 'published in' parent." assertion.
article_published_in label "article published in - The enclosing parent serial containing the article should have industry-standard identifier from ISSN." assertion.
aspect_qualifier label "aspect qualifier - Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association." assertion.
assesses label "assesses - The effect of a thing on a target was interrogated in some assay. A relationship between some perturbing agent (usually a chemical compound) and some target entity, where the affect of the perturbing agent on the target entity was interrogated in a particular assay. The target might be a particular protein, tissue, phenotype, whole organism, cell line, or other type of biological entity." assertion.
associated_environmental_context label "associated environmental context - An attribute that can be applied to an association where the association holds between two entities located or occurring in a particular environment. For example, two microbial taxa may interact in the context of a human gut; a disease may give rise to a particular phenotype in a particular environmental exposure. # TODO: add examples of values for this property." assertion.
associated_with_decreased_likelihood_of label "associated with decreased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is less probable." assertion.
associated_with_increased_likelihood_of label "associated with increased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is more probable." assertion.
associated_with_likelihood_of label "associated with likelihood of - A a relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated, wherein the state or value of one variable predicts the future state or value of the other. E.g. the statement “An Atrial Fibrillation (Afib) diagnosis is associated with likelihood of a Myocardial Infarction (MI) diagnosis” asserts that the state of having Afib is associated with an increased or decreased likelihood that a patient will later exhibit MI." assertion.
associated_with_resistance_to label "associated with resistance to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of resistance to treatment by the chemical." assertion.
associated_with_sensitivity_to label "associated with sensitivity to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of sensitivity to treatment by the chemical." assertion.
association_category label "association category - Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. * In a neo4j database this MAY correspond to the neo4j label tag. * In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, ... In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}" assertion.
association_slot label "association slot - any slot that relates an association to another entity" assertion.
attribute_name label "attribute name - The human-readable 'attribute name' can be set to a string which reflects its context of interpretation, e.g. SEPIO evidence/provenance/confidence annotation or it can default to the name associated with the 'has attribute type' slot ontology term." assertion.
author label "author - an instance of one (co-)creator primarily responsible for a written work" assertion.
authors label "authors - connects an publication to the list of authors who contributed to the publication. This property should be a comma-delimited list of author names. It is recommended that an author's name be formatted as "surname, firstname initial.". Note that this property is a node annotation expressing the citation list of authorship which might typically otherwise be more completely documented in biolink:PublicationToProviderAssociation defined edges which point to full details about an author and possibly, some qualifiers which clarify the specific status of a given author in the publication." assertion.
available_from label "available from - " assertion.
base_coordinate label "base coordinate - A position in the base coordinate system. Base coordinates start at position 1 instead of position 0." assertion.
behavior_to_behavioral_feature_association_object label "behavior to behavioral feature association object - behavioral feature that is the object of the association" assertion.
behavior_to_behavioral_feature_association_subject label "behavior to behavioral feature association subject - behavior that is the subject of the association" assertion.
binds label "binds - A causal mechanism mediated by the direct contact between effector and target chemical or biomolecular entity, which form a stable physical interaction." assertion.
biological_role_mixin label "biological role mixin - A role played by the chemical entity or part thereof within a biological context." assertion.
biomarker_for label "biomarker for - holds between a measurable chemical entity and a disease or phenotypic feature, where the entity is used as an indicator of the presence or state of the disease or feature." assertion.
bonferonni_adjusted_p_value label "bonferonni adjusted p value - The Bonferroni correction is an adjustment made to P values when several dependent or independent statistical tests are being performed simultaneously on a single data set. To perform a Bonferroni correction, divide the critical P value (α) by the number of comparisons being made. P is always italicized and capitalized. The actual P value* should be expressed (P=. 04) rather than expressing a statement of inequality (P<. 05), unless P<." assertion.
book_chapter_published_in label "book chapter published in - The enclosing parent book containing the chapter should have industry-standard identifier from ISBN." assertion.
book_id label "book id - Books should have industry-standard identifier such as from ISBN." assertion.
book_type label "book type - Should generally be set to an ontology class defined term for 'book'." assertion.
broad_match label "broad match - a list of terms from different schemas or terminology systems that have a broader, more general meaning. Broader terms are typically shown as parents in a hierarchy or tree." assertion.
broad_matches label "broad matches - A list of terms from different schemas or terminology systems that have a broader meaning. Such terms often describe a more general concept from different ontological perspectives." assertion.
capable_of label "capable of - holds between a physical entity and process or function, where the continuant alone has the ability to carry out the process or function." assertion.
case_to_entity_association_mixin_subject label "case to entity association mixin subject - the case (e.g. patient) that has the property" assertion.
catalyst_qualifier label "catalyst qualifier - a qualifier that connects an association between two causally connected entities (for example, two chemical entities, or a chemical entity in that changes location) and the gene product, gene, or complex that enables or catalyzes the change." assertion.
causal_mechanism_qualifier label "causal mechanism qualifier - A statement qualifier representing a type of molecular control mechanism through which an effect of a chemical on a gene or gene product is mediated (e.g. 'agonism', 'inhibition', 'allosteric modulation', 'channel blocker')" assertion.
caused_by label "caused by - holds between two entities where the occurrence, existence, or activity of one is caused by the occurrence or generation of the other" assertion.
causes label "causes - holds between two entities where the occurrence, existence, or activity of one causes the occurrence or generation of the other" assertion.
cell_line_as_a_model_of_disease_association_subject label "cell line as a model of disease association subject - A cell line derived from an organismal entity with a disease state that is used as a model of that disease." assertion.
cell_line_to_disease_or_phenotypic_feature_association_subject label "cell line to disease or phenotypic feature association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
cell_line_to_entity_association_mixin_subject label "cell line to entity association mixin subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chapter label "chapter - chapter of a book" assertion.
chemical_affects_gene_association_anatomical_context_qualifier label "chemical affects gene association anatomical context qualifier - A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location)." assertion.
chemical_affects_gene_association_causal_mechanism_qualifier label "chemical affects gene association causal mechanism qualifier - A statement qualifier representing a type of molecular control mechanism through which an effect of a chemical on a gene or gene product is mediated (e.g. 'agonism', 'inhibition', 'allosteric modulation', 'channel blocker')" assertion.
chemical_affects_gene_association_object label "chemical affects gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chemical_affects_gene_association_predicate label "chemical affects gene association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
chemical_affects_gene_association_qualified_predicate label "chemical affects gene association qualified predicate - Predicate to be used in an association when subject and object qualifiers are present and the full reading of the statement requires a qualification to the predicate in use in order to refine or increase the specificity of the full statement reading. This qualifier holds a relationship to be used instead of that expressed by the primary predicate, in a ‘full statement’ reading of the association, where qualifier-based semantics are included. This is necessary only in cases where the primary predicate does not work in a full statement reading." assertion.
chemical_affects_gene_association_species_context_qualifier label "chemical affects gene association species context qualifier - A statement qualifier representing a taxonomic category of species in which a relationship expressed in an association took place." assertion.
chemical_affects_gene_association_subject label "chemical affects gene association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chemical_entity_assesses_named_thing_association_object label "chemical entity assesses named thing association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chemical_entity_assesses_named_thing_association_predicate label "chemical entity assesses named thing association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
chemical_entity_assesses_named_thing_association_subject label "chemical entity assesses named thing association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chemical_entity_or_gene_or_gene_product_regulates_gene_association_object label "chemical entity or gene or gene product regulates gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chemical_entity_or_gene_or_gene_product_regulates_gene_association_predicate label "chemical entity or gene or gene product regulates gene association predicate - the direction is always from regulator to regulated" assertion.
chemical_entity_or_gene_or_gene_product_regulates_gene_association_subject label "chemical entity or gene or gene product regulates gene association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
chemical_entity_to_entity_association_mixin_subject label "chemical entity to entity association mixin subject - the chemical entity that is an interactor" assertion.