Matches in Nanopublications for { ?s <http://www.w3.org/2004/02/skos/core#definition> ?o ?g. }
- SAC-TD3Hybrid definition "SAC-TD3 is an algorithm incorporating elements both from the SAC and TD3 algorithms for reinforcement learning. It incorporates the idea of entropy regularization from SAC while borrowing target policy smoothening, delayed policy updates from the TD3 algorithm. It has been used to estimate the reaction barrier given a potential energy surface. Stable states in complex systems correspond to local minima on the associated potential energy surface, transitions between which govern the dynamics of the system. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and the system remains near a local minimum for most of the time. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This problem has is formulated as a cost-minimization problem and solved using the aforementioned reinforcement learning algorithm. The exploratory nature of the algorithm enables efficient sampling and better estimation of the minimum energy barrier for transitions." assertion.
- SAC-TD3_Hybrid definition "SAC-TD3 is an algorithm incorporating elements both from the SAC and TD3 algorithms for reinforcement learning. It incorporates the idea of entropy regularization from SAC while borrowing target policy smoothening, delayed policy updates from the TD3 algorithm. It has been used to estimate the reaction barrier given a potential energy surface. Stable states in complex systems correspond to local minima on the associated potential energy surface, transitions between which govern the dynamics of the system. Precisely determining the transition pathways in complex and high-dimensional systems is challenging because these transitions are rare events, and the system remains near a local minimum for most of the time. The probability of such transitions decreases exponentially with the height of the energy barrier, making the system's dynamics highly sensitive to the calculated energy barriers. This problem has is formulated as a cost-minimization problem and solved using the aforementioned reinforcement learning algorithm. The exploratory nature of the algorithm enables efficient sampling and better estimation of the minimum energy barrier for transitions." assertion.
- RighteousPersonsFoundation definition "A nonprofit organization that funds Jewish arts and culture, support for holocaust survivors, Jewish community social services, and interfaith leadership" assertion.
- Detective definition "individual who investigates crimes, gathers clues, and solves mysteries, typically using analytical skills and reasoning." assertion.
- catchphrase definition "A phrase or expression that is commonly associated with a character, often repeated for comedic or dramatic effect." assertion.
- AnimatedCharacter definition "A character created for animation that appears in television shows, films, or comic books and often has distinct voices, personality traits, and appearances that may evolve over time." assertion.
- AnimatedCharacter definition "A character created for animation that appears in television shows, films, or comic books and often has distinct voices, personality traits, and appearances that may evolve over time." assertion.
- deputy_commissioner definition "A police official of higher ranker" assertion.
- Serkil definition "a person who commits a series of murders, often with no apparent motive and typically following a characteristic, predictable behaviour pattern." assertion.
- hen definition "female chicken" assertion.
- Cthulhu_Mythos definition "The Cthulhu Mythos is a shared universe originated by H.P. Lovecraft, consisting of stories that revolve around ancient cosmic deities like Cthulhu. It represents the theme of humanity's insignificance in the vast, indifferent universe." assertion.
- WaterType definition "Water is one of the three basic elemental types of pocket monsters, along with Fire and Grass" assertion.
- tamagotchi-adult definition "A Tamagotchi that is in the adult stage. It is usually the last stage before death. It is the longest stage in a Tamagotchi's life span (besides a senior). Upon evolving into an adult, the Tamagotchi will unlock multiple new features and abilities." assertion.
- baddestMan definition ""A title used to refer to a person who is widely regarded as the most physically dominant and intimidating fighter in the world, often associated with boxing or combat sports. Historically linked to Mike Tyson during his reign as heavyweight boxing champion."" assertion.
- Mage definition "Someone who studies and is able to use magic" assertion.
- loves definition "to have and show affection towards someone or something" assertion.
- Reference_Sequence definition "TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP" assertion.
- Reference_Sequence definition "TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP" assertion.
- Protein_Sequence definition "A sequence of letters representing the 20 standard amino acids." assertion.
- Composition_Vector definition "A vector stating how many amino acids are present in the protein sequence in alphabetical order, e.g. <A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y>" assertion.
- Sequence_Length definition "An integer describing amount of amino acids" assertion.
- ACE2_A12C definition "A12C Mutational Variant of P0DTC2 ACE2 Receptor Binding Domain" assertion.
- structural_metric definition "A quantitative metric that describes structural properties of predicted the tertiary structure of a protein by a structure prediction algorithm." assertion.
- structural_metric definition "A quantitative metric that describes structural properties of predicted the tertiary structure of a protein by a structure prediction algorithm." assertion.
- RMSD definition "Average distance between corresponding atoms of two superimposed protein structures, calculated by the square root of the average of the squared coordinate differences, indicating overall structural similarity." assertion.
- RMSD definition "Average distance between corresponding atoms of two superimposed protein structures, calculated by the square root of the average of the squared coordinate differences, indicating overall structural similarity." assertion.
- TM_Score definition "Normalized score ranging from 0 to 1, evaluating the structural similarity between protein structures, less sensitive to local variations, indicating overall structural similarity with a focus on fold recognition." assertion.
- TM_Score definition "Normalized score ranging from 0 to 1, evaluating the structural similarity between protein structures, less sensitive to local variations, indicating overall structural similarity with a focus on fold recognition." assertion.
- Solvent_Accessible_Surface_Area definition "Measures the surface area of a protein that is accessible to a solvent, which can impact protein stability and interactions." assertion.
- Solvent_Accessible_Surface_Area definition "Measures the surface area of a protein that is accessible to a solvent, which can impact protein stability and interactions." assertion.
- Electrostatic_Potential definition "Variation in the electrostatic potential on the protein surface, affecting protein interactions and binding affinity." assertion.
- Electrostatic_Potential definition "Variation in the electrostatic potential on the protein surface, affecting protein interactions and binding affinity." assertion.
- Average_Hydrophobicity definition "The hydrophobicity of the predicted structures is quantified with calculating the average hydrophobicity according to the Kyte-Doolittle scale. The scale is used for detecting and quantifying hydrophobic regions of proteins, where a region with a positive value indicating hydrophobicity. The scale assigns a hydropathy score to amino acids and suggests a window size that is optimal for the type of protein." assertion.
- Average_Hydrophobicity definition "The hydrophobicity of the predicted structures is quantified with calculating the average hydrophobicity according to the Kyte-Doolittle scale. The scale is used for detecting and quantifying hydrophobic regions of proteins, where a region with a positive value indicating hydrophobicity. The scale assigns a hydropathy score to amino acids and suggests a window size that is optimal for the type of protein." assertion.
- pLDDT definition "The predicted local distance difference test is a confidence score indicating the predicted local accuracy and internal protein dynamics of a protein structure, indicating the transient nature of secondary structures and their potential for disorder–order transitions." assertion.
- pLDDT definition "The predicted local distance difference test is a confidence score indicating the predicted local accuracy and internal protein dynamics of a protein structure, indicating the transient nature of secondary structures and their potential for disorder–order transitions." assertion.
- AgMata definition "Prediction of protein regions that are likely to cause beta-aggregation" assertion.
- AgMata definition "Prediction of protein regions that are likely to cause beta-aggregation" assertion.
- disoMine definition "Prediction of protein disorder from sequence only" assertion.
- disoMine definition "Prediction of protein disorder from sequence only" assertion.
- earlyFolding definition "Prediction of protein early folding regions from sequence only" assertion.
- earlyFolding definition "Prediction of protein early folding regions from sequence only" assertion.
- DynaMine definition "Prediction of protein backbone dynamics from sequence only" assertion.
- DynaMine definition "Prediction of protein backbone dynamics from sequence only" assertion.
- DynaMine definition "Prediction of protein backbone dynamics from sequence only" assertion.
- emperical_metric definition "A quantitative metric that describes biological property of a protein that has been found empirically in a lab." assertion.
- emperical_metric definition "A quantitative metric that describes biological property of a protein that has been found empirically in a lab." assertion.
- ACE2_binding definition "The binding strength of the receptor binding domain quantified with log(Kd) found through Deep Mutational Scanning." assertion.
- hackathon definition "an event where hacking happens" assertion.
- actress definition "people who use acting as a way of living" assertion.